Encyclopedia of Joseph Smith’s Teachings, pg. 540; “Thus were we persecuted on account of our religious faith—in a country the Constitution of which guarantees to every man the indefeasible right to worship God according to the dictates of his own conscience—and by men, too, who were professors of religion, and who were not backward to maintain the right of religious liberty for themselves, though they could thus wantonly deny it to us. (Joseph Smith, History of The Church of Jesus Christ of Latter-day Saints, 7 Vols. 1:97)”
2 Timothy 4:2; “Preach the word; be instant in season, out of season; reprove, rebuke, exhort with all longsuffering and doctrine.”
America at this time was a nation of laws. It was more of a republic than it is now. The government wasn’t babysitting how you worshipped God, but they did react when the law was broken.
The Mormon Church was always finding themselves in trouble with local and the federal government. They created their own banking system, practiced polygamy, practiced blood atonement, committed arson, declared martial law, committed fraud…this has nothing to do with religious tolerance but everything to do with your every day common criminal behavior.